Atacama Research Articles

The camouflaged tsunami record of arid coasts: Looking for sand in the Atacama Desert

The camouflaged tsunami record of arid coasts: Looking for sand in the Atacama Desert

Machine Learning for the Classification and Analysis of Biomass Indices and their relationship with Climate Change, Atacama Desert

In this work we use Machine Learning (Randon Forest) as a tool to classify biomass and calculate vegetation indices seeking to identify the characteristics of the vegetation cover at the head of the Atacama Desert. The aim is to establish the correlation between vegetation indices and precipitation, in order to know their reliability on the climatology in this region. The geospatial analysis based on Google Earth Engine (GEE) and the processing of Landsat 5 ETM and Landsat 8 OLI/TIRS images was important, for the period 1985 - 2022, which made it possible to characterize climate change. The NDVI, SAVI, GVI and RVI have been tested and validated in arid systems. The NDVI responds positively to precipitation in the wet season and weakly in the winter rainy season. It is confirmed that the high NDVI corresponds to summer, after a prolonged drought. Towards the years 2020 and 2022, an increase in vegetation cover is recorded in places with higher temperatures, evidencing climate change and reflected in biomass indices.

Protist communities of microbial mats from the extreme environments of five saline Andean lagoons at high altitudes in the Atacama Desert.

Heterotrophic protists colonizing microbial mats have received little attention over the last few years, despite their importance in microbial food webs. A significant challenge originates from the fact that many protists remain uncultivable and their functions remain poorly understood. Metabarcoding studies of protists in microbial mats across high-altitude lagoons of different salinities (4.3-34 practical salinity units) were carried out to provide insights into their vertical stratification at the millimeter scale. DNA and cDNA were analyzed for selected stations. Sequence variants classified as the amoeboid rhizarian Rhogostoma and the ciliate Euplotes were found to be common members of the heterotrophic protist communities. They were accompanied by diatoms and kinetoplastids. Correlation analyses point to the salinity of the water column as a main driver influencing the structure of the protist communities at the five studied microbial mats. The active part of the protist communities was detected to be higher at lower salinities (<20 practical salinity units). We found a restricted overlap of the protist community between the different microbial mats indicating the uniqueness of these different aquatic habitats. On the other hand, the dominating genotypes present in metabarcoding were similar and could be isolated and sequenced in comparative studies (Rhogostoma, Euplotes, Neobodo). Our results provide a snapshot of the unculturable protist diversity thriving the benthic zone of five athalossohaline lagoons across the Andean plateau.

Phylogenetically diverse wild plant species use common biochemical strategies to thrive in the Atacama Desert.

The best ideotypes are under mounting pressure due to increased aridity. Understanding the conserved molecular mechanisms that evolve in wild plants adapted to harsh environments is crucial in developing new strategies for agriculture. Yet our knowledge of such mechanisms in wild species is scant. We performed metabolic pathway reconstruction using transcriptome information from 32 Atacama and phylogenetically related species that do not live in Atacama (Sisters species). We analyzed reaction enrichment to understand the commonalities and differences of Atacama plants. To gain insights into the mechanisms that ensure survival, we compared expressed gene isoform numbers and gene expression patterns between the annotated biochemical reactions from 32 Atacama and Sister species. We found biochemical convergences characterized by reactions enriched in at least 50% of the Atacama species, pointing to potential advantages against drought and nitrogen starvation, for instance. These findings suggest that the adaptation in the Atacama Desert may result in part from shared genetic legacies governing the expression of key metabolic pathways to face harsh conditions. Enriched reactions corresponded to ubiquitous compounds common to extreme and agronomic species and were congruent with our previous metabolomic analyses. Convergent adaptive traits offer promising candidates for improving abiotic stress resilience in crop species.

Historical catastrophic floods at the southern edge of the Atacama Desert: A multi-archive reconstruction of the Copiapó river extreme events

The last hydrometeorological extreme event that caused large floods in the southern Atacama Desert in March 2015 raised concern about how little was known about the fluvial dynamic of these arid basins. Understanding the response of intermittent and ephemeral rivers in drylands to the present context of global change is critical to preserve the ecological and human systems they support, to sustainably manage their scarce water resources and to develop flood risk management plans. We have studied the instrumental and historical record and explored the potential of the Copiapó River geological record in the comprehension of how extraordinary the 2015 flood was and how its fluvial dynamic relates with global climate oscillations. We have identified 36 flood events that have occurred in the last 400 years: 22 of them have been classified as ordinary rises of the river flow (discharges <30 m3/s), 11 as extraordinary floods in which the damage is confined to areas adjacent to the river (discharges 30–180 m3/s), and only 3 as catastrophic floods (discharges >180 m3/s), including the 2015 flood event. The incorporation of the historical and palaeohydrological data into the flood frequency analysis results in an increase of the magnitude of the flood quantiles in which large flood events occur with an average recurrence interval of 120 years. Most of the flood events were caused by heavy rains that are largely linked to the Pacific Decadal Oscillation and the Atlantic Multidecadal Oscillation with a superimposed effect of the ENSO. Discharges >30 m3/s, i.e., extraordinary and catastrophic floods, occur with positive phases of the PDO and the ENSO. Further exploration of the fluvial geological record of the Copiapó River will help lengthening to thousands of years the flood record what will help improving communities' resilience by anticipating flood hazards in the current global change context, in which stronger rainfall events modulated by ENSO and ENSO-like conditions are expected.

Insights into the diversity and survival strategies of soil bacterial isolates from the Atacama Desert.

The Atacama Desert, the driest, with the highest radiation, and one of the most ancient deserts in the world, is a hostile environment for life. We have a collection of 74 unique bacterial isolates after cultivation and confirmation by 16S rRNA gene sequencing. Pigmentation, biofilm formation, antimicrobial production against Escherichia coli MG1655 and Staphylococcus aureus HG003, and antibiotic resistance were assessed on these isolates. We found that approximately a third of the colonies produced pigments, 80% of isolates formed biofilms, many isolates produce growth inhibiting activities against E. coli and/or S. aureus, and many were resistant to antibiotics. The functional characterization of these isolates gives us insight into the adaptive bacterial strategies in harsh environments and enables us to learn about their possible use in agriculture, healthcare, or biotechnology.

A Chronological Model for Inca Provincial Expansion: The Case of the Copiapo Valley

Abstract This article examines a new dataset of radiocarbon dates that provides insights into the progressive installation of Inca infrastructure in the Copiapo Valley, situated at the southern edge of the Atacama Desert in northern Chile. It shows that the Inca imperial expansion in this region was not a linear process and was likely shaped by local negotiations and conflicts. The findings describe three main stages of Inca expansion. The first is the construction of the North–South Inca Road and the establishment of high-altitude mountain shrines. The next stage consisted of a physical intervention in a local village located in the upper valley, including the construction of administrative buildings and public spaces. The last stage involved indirect intervention in local villages, characterized by the presence of isolated administrative buildings that were potentially used for diplomacy and negotiation. I argue that the Inca imperial expansion, characterized by evolving strategies across regions and time periods, not only demonstrates the state's capacity for learning but also suggests the pivotal role of local actors in positions of power who wielded agency to shape these developments.

Effect of In Vitro Micropropagation on the Chemical, Antioxidant, and Biological Characteristics of Senecio nutans Sch. Bip., an Endemic Plant of the Atacama Desert Andean Region.

The species Senecio nutans Sch. Bip., commonly called "chachacoma", is widely used as a medicinal plant by the Andean communities of Northern Chile. Ethanolic extracts of S. nutans and the main compound, 4-hydroxy-3-(3-methyl-2-butenyl) acetophenone, have shown interesting biological activity. However, due to the high-altitude areas where this species is found, access to S. nutans is very limited. Due to the latter, in this work, we carried out micropropagation in vitro and ex vitro adaptation techniques as an alternative for the massive multiplication, conservation, and in vitro production of high-value metabolites from this plant. The micropropagation and ex vitro adaptation techniques were successfully employed, and UHPLC-DAD analysis revealed no significant changes in the phenolic profile, with acetophenone 4 being the most abundant metabolite, whose antioxidant and antibacterial activity was studied. Independently of the applied culture condition, the ethanolic extracts of S. nutans presented high activity against both Gram-positive and Gram-negative bacteria, demonstrating their antimicrobial capacity. This successful initiation of in vitro and ex vitro cultures provides a biotechnological approach for the conservation of S. nutans and ensures a reliable and consistent source of acetophenone 4 as a potential raw material for pharmacological applications.

Invasive New and Old World freshwater species in isolated springs of the Atacama Desert: implications for native species

ABSTRACT Invasive species can significantly alter invaded ecosystems. In this study, we report the presence of two invasive species, the poeciliid fish Poecilia reticulata and the gastropod Melanoides tuberculata, in three isolated springs from the coast of the Atacama Desert in Antofagasta city, northern Chile. Both species were identified through diagnostic morphological features and phylogenetic analysis. This is the first confirmed record of P. reticulata in natural ecosystems of Chile. The finding of M. tuberculata represents the first record of the species in the Antofagasta Region, and the third in the country. Considering the well-documented adverse effects of both species on invaded ecosystems and their high potential for spread, we recommend the prompt implementation of mitigation measures. These should focus on the direct mechanical removal of these species, given the relatively straightforward sampling process and the relatively small size of the springs. Such measures would significantly contribute to the preservation of native species, particularly those categorized as vulnerable.

CLASS Angular Power Spectra and Map-component Analysis for 40 GHz Observations through 2022

Measurement of the largest angular scale (ℓ < 30) features of the cosmic microwave background (CMB) polarization is a powerful way to constrain the optical depth to reionization and search for the signature of inflation through the detection of primordial B-modes. We present an analysis of maps covering 73.6% of the sky made from the 40 GHz channel of the Cosmology Large Angular Scale Surveyor (CLASS) from 2016 August to 2022 May. Taking advantage of the measurement stability enabled by front-end polarization modulation and excellent conditions from the Atacama Desert, we show this channel achieves higher sensitivity than the analogous frequencies from satellite measurements in the range 10 < ℓ < 100. Simulations show the CLASS linear (circular) polarization maps have a white noise level of 125(130)μKarcmin . We measure the Galaxy-masked EE and BB spectra of diffuse synchrotron radiation and compare to space-based measurements at similar frequencies. In combination with external data, we expand measurements of the spatial variations of the synchrotron spectral energy density (SED) to include new sky regions and measure the diffuse SED in the harmonic domain. We place a new upper limit on a background of circular polarization in the range 5 < ℓ < 125 with the first bin showing D ℓ < 0.023 μKCMB2 at 95% confidence. These results establish a new standard for recovery of the largest-scale CMB polarization from the ground and signal exciting possibilities when the higher sensitivity and higher-frequency CLASS channels are included in the analysis.

Isolation of Thermophilic Bacteria from Extreme Environments in Northern Chile.

The northern region of Chile boasts unique geographical features that support the emergence of geothermal effluents, salt lagoons, and coastal creeks. These extreme climate conditions create polyextreme habitats for microorganisms, particularly adapted to survive these harsh environments. These extremophilic microorganisms hold immense potential as a source of hydrolytic enzymes, among other biotechnological applications. In this study, we isolated 15 strains of aerobic thermophilic bacteria (45-70 °C) from sediment samples collected at five different ecological sites, including hot springs, geothermal fields, and lagoons in the Atacama Desert and Andes high planes. Analyses of the 16S rRNA gene sequences of the isolates showed a close genetic similarity (98-100%) with microorganisms of the genera Parageobacillus, Geobacillus, Anoxybacillus, and Aeribacillus. Notably, these thermophiles exhibited significant hydrolytic enzyme activity, particularly amylases, lipases, and proteases. These findings underscore the potential of using these thermophilic bacterial strains as an invaluable source of thermozymes with wide-ranging applications in diverse industries, such as detergent formulations, pharmaceutical processing, and food technology. This research highlights the ecological significance of these extreme environments in the Atacama Desert and Andes high plains, which serve as vital ecological niches housing extremophilic bacteria as a genetic source of relevant thermozymes, promising great potential for innovation in the biotechnology industry.

Organic matter imports to the Atacama Desert using polycyclic aromatic hydrocarbons as tracer

The Atacama Desert, despite its extreme hostile conditions, still harbours traces of life in its dusty surface. Until now, it remains open whether organic molecules found in topsoils have their origin from in-situ biotic processes in the hyper-arid core, or whether and to which degree they stem from outside the desert and its border regions. In order to trace atmospheric organic matter input, we analyzed the concentration of polycyclic aromatic hydrocarbons (PAHs) which almost exclusively derive from combustion processes and compared this to total organic carbon (TOC) concentrations. We sampled topsoil (0–15 cm depth) in one coastal (Paposo) and one inland aridity transect (Aroma) and compared them to atmospheric dust collected over two months in the hyper-arid core of the desert (Yungay). We found TOC and PAHs in all desert soil and dust samples. The sum of 18 analyzed PAHs ranged from 0.001 to 0.31 ng g−1 in the Paposo transect and from 0.14 to 0.78 ng g−1 in the Aroma transect, with moderate correlation (R2 = 0.68, p < 0.05) between TOC and PAHs. Measured PAH concentration in the dust was up to 5000 times higher and varied between 0.45 and 5.31 ng g−1. PAHs contributed with up to 0.25% to the TOC in dust and with 0.1% to the TOC in soils. This indicates that not all organic matter found in deserts is a trace for life defying extreme conditions, as it can also stem from sources outside or at the borders of the desert. We hence recommend verifying the origin of organic matter found in regions at the dry limit and highlight the overall presence of atmospheric pollutants on earth.

Arsenic biomineralization and selenium nanoparticles biosynthesis by Halomonas boliviensis strain H-10 isolated from the high-altitude Salar de Huasco salt flat (Chile)

High-altitude Andean wetlands of the Atacama Desert (Chile), including the Salar de Huasco salt flat, are unusual environments characterized by a great variability of physical-chemical conditions, often combined with a high concentration of heavy metals, including arsenic (As) and semimetals, such as selenium (Se). Microorganisms present in these environments evolved adaptative strategies to cope with environmental stresses, with biotechnological potentials. The present work investigated the natural bacterial community composition in sediments collected from the Salar de Huasco salt flat, by high-throughput Illumina sequencing, and to isolate bacterial strains able to remove As and biosynthesize Se nanoparticles (SeNPs). Dominant taxonomic groups (abundance ≥1%) were affiliated to Proteobacteria (mainly consisting in Delta- and Alfa- Gamma-proteobacteria) Bacteriodetes, Firmicutes, Acidobacteria, Spirochaetes, Deinococcus-Thermus, Gemmatimonadetes and Verrucomicrobia. Halomonas boliviensis strain H-10 was able to both biomineralize As and biosynthesise SeNPs; therefore, the characteristics of H. boliviensis strain H-10 could be used for biotechnological purposes, including As bioremediation from water and bioproduction of SeNPs.

From Natives to Foreigners: Bolivian Migration, Discrimination, and Ethnic-Labor Subsidiarity in Chuquicamata During the Guggenheim Ownership (Chile, 1912–1925)

Abstract The War of the Pacific (1879–1883) between Chile, Peru, and Bolivia marked a turning point in the political and socio-economic development of the Atacama Desert. Formerly part of Bolivia, this area came under the control and jurisdiction of Chile in 1884. This shift in sovereignty substantially altered the tri-national geopolitics, forcing the local Bolivian population to flee. The newly annexed region's rich mineral resources became subject to a mining colonization process. In 1912, the Guggenheim family founded The Chile Exploration Company and began the industrialization of the Chuquicamata copper mine. Located in the heart of the Atacama Desert, this was the world's largest copper mine during the twentieth century. Although the local Bolivian population had fled the Atacama Desert following the war, many returned to work in the Guggenheim mine almost thirty years later. Between 1912 and 1925, 239 Bolivians labeled as foreigners and “Indians” were employed in diverse production stages or subsidiary services. Bureaucratic migratory documents and newspaper archives allow us to quantify and characterize Bolivian migration to Chuquicamata. We argue that an ethnic-labor subsidiarity emerged, a historical process resulting from ethnic discrimination, expressed in the disposition and physical costs of mining work and low wages. While the war altered the mining territory of Atacama, ethnic-labor subsidiarity of the Bolivian workforce sustained the expansion of U.S. capitalism in the Chuquicamata copper mine.

When another one bites the dust: Environmental impact of global copper demand on local communities in the Atacama mining hotspot as registered by tree rings

Assessing the impact of mining activity on the availability of environmental pollutants is crucial for informing health policies in anticipation of future production scenarios of critical minerals essential for the transition to a net-zero carbon society. However, temporal and spatial monitoring is often sparse, and measurements may not extend far enough back in time. In this study, we utilize variations of chemical elements contained in tree-rings collected in local villages from an area heavily affected by copper mining in the Atacama Desert since the early 20th century to evaluate the temporal distribution of pollutants and their relationship with local drivers. By combining time-varying data on local drivers, such as copper production and the dry tailings deposit area, we show how the surge in copper production during the 1990s, fueled by trade liberalization and increased international demand, led to a significant increment in the availability of metal(loid)s related to mining activities on indigenous lands. Our findings suggest that the environmental legislation in Chile may be underestimating the environmental impact of tailing dams in neighboring populations, affecting the well-being of Indigenous Peoples from the Atacama mining hotspot region. We argue that future changes in production rates driven by international demand could have negative repercussions on the environment and local communities. Therefore, mining emissions and the management of tailing dams should be carefully considered to anticipate their potential negative effects on human and ecosystem health.

Discovery of a new colony and nest attendance patterns of two Hydrobates storm-petrels in the Atacama Desert of northern Chile

Discovery of a new colony and nest attendance patterns of two Hydrobates storm-petrels in the Atacama Desert of northern Chile

The Simons Observatory: Development and Optical Evaluation of Achromatic Half-Wave Plates

The Simons Observatory (SO) experiment is a cosmic microwave background (CMB) experiment located in the Atacama Desert, Chile. The SO’s small aperture telescopes (SATs) consist of three telescopes designed for precise CMB polarimetry at large angular scales. Each SAT uses a cryogenic rotating half-wave plate (HWP) as a polarization modulator to mitigate atmospheric 1/f noise and other systematics. To realize efficient polarization modulation over the observation bands, we fabricated an achromatic HWP (AHWP) consisting of three sapphire plates with anti-reflection coatings. The AHWP is designed to have broadband modulation efficiency and transmittance. This paper reports on the design and the preliminary characterization of the AHWPs for SATs.

Variovorax sp. strain P1R9 applied individually or as part of bacterial consortia enhances wheat germination under salt stress conditions

Endophytes isolated from extremophile plants are interesting microbes for improving the stress tolerance of agricultural plants. Here, we isolated and characterized endophytic bacteria showing plant growth-promoting (PGP) traits from plants in two extreme Chilean biomes (Atacama Desert and Chilean Patagonia). Forty-two isolates were characterized as both halotolerant auxin producers (2–51 mg L−1) and 1-aminocyclopropane-1-carboxylate (ACC)-degrading bacteria (15–28 µmol αKB mg protein−1 h−1). The most efficient isolates were tested as single strains, in dual and triple consortia, or in combination with previously reported PGP rhizobacteria (Klebsiella sp. 27IJA and 8LJA) for their impact on the germination of salt-exposed (0.15 M and 0.25 M NaCl) wheat seeds. Interestingly, strain P1R9, identified as Variovorax sp., enhanced wheat germination under salt stress conditions when applied individually or as part of bacterial consortia. Under salt stress, plants inoculated with dual consortia containing the strain Variovorax sp. P1R9 showed higher biomass (41%) and reduced lipid peroxidation (33–56%) than uninoculated plants. Although the underlying mechanisms remain elusive, our data suggest that the application of Variovorax sp. P1R9, alone or as a member of PGP consortia, may improve the salt stress tolerance of wheat plants.

Toward a Spectrophotometric Characterization of the Chilean Night Sky. A First Quantitative Assessment of ALAN across the Coquimbo Region

Light pollution is recognized as a global issue that, like other forms of anthropogenic pollution, has a significant impact on ecosystems and adverse effects on living organisms. Plentiful evidence suggests that it has been increasing at an unprecedented rate at all spatial scales. Chile—which, thanks to its unique environmental conditions, has become one of the most prominent astronomical hubs of the world—seems to be no exception. In this paper we present the results of the first observing campaign aimed at quantifying the effects of artificial lights at night on the brightness and colors of the Chilean sky. Through the analysis of photometrically calibrated all-sky images captured at four representative sites with an increasing degree of anthropization, and the comparison with state-of-the-art numerical models, we show that significant levels of light pollution have already altered the appearance of the natural sky even in remote areas. Our observations reveal that the light pollution level recorded in a small town of the Coquimbo Region is comparable with that of Flagstaff, Arizona, a ten times larger Dark Sky city, and that a mid-size urban area that is a gateway to the Atacama Desert displays photometric indicators of night sky quality that are typical of the most densely populated regions of Europe. Our results suggest that there is still much to be done in Chile to keep light pollution under control and thus preserve the darkness of its night sky—a natural and cultural heritage that it is our responsibility to protect.

Phylogenomic insights into the first multicellular streptophyte

Streptophytes are best known as the clade containing the teeming diversity of embryophytes (land plants).1,2,3,4 Next to embryophytes are however a range of freshwater and terrestrial algae that bear important information on the emergence of key traits of land plants. Among these, the Klebsormidiophyceae stand out. Thriving in diverse environments-from mundane (ubiquitous occurrence on tree barks and rocks) to extreme (from the Atacama Desert to the Antarctic)-Klebsormidiophyceae can exhibit filamentous body plans and display remarkable resilience as colonizers of terrestrial habitats.5,6 Currently, the lack of a robust phylogenetic framework for the Klebsormidiophyceae hampers our understanding of the evolutionary history of these key traits. Here, we conducted a phylogenomic analysis utilizing advanced models that can counteract systematic biases. We sequenced 24 new transcriptomes of Klebsormidiophyceae and combined them with 14 previously published genomic and transcriptomic datasets. Using an analysis built on 845 loci and sophisticated mixture models, we establish a phylogenomic framework, dividing the six distinct genera of Klebsormidiophyceae in a novel three-order system, with a deep divergence more than 830 million years ago. Our reconstructions of ancestral states suggest (1) an evolutionary history of multiple transitions between terrestrial-aquatic habitats, with stem Klebsormidiales having conquered land earlier than embryophytes, and (2) that the body plan of the last common ancestor of Klebsormidiophyceae was multicellular, with a high probability that it was filamentous whereas the sarcinoids and unicells in Klebsormidiophyceae are likely derived states. We provide evidence that the first multicellular streptophytes likely lived about a billion years ago.